| ID | hsa_circ_0000280 | |||||
| Alias | hsa_circ_000532 | |||||
| Position | chr11:18312988-18314523 | |||||
| Strand | - | |||||
| Genomic length | 1535 | |||||
| Spliced sequence length | 656 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_181508 | |||||
| Gene symbol | HPS5 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Maass2017 | HUAEC | 3 | 3 | 10 | 8 | WAS2 | 10 | 9 | 12 | 7 | ada_scid | 4 | 4 | 5 | 5 | vena_cava | 3 | 3 | 2 | 2 | placenta | 3 | 3 | 0 | 4 | decidua | 2 | 2 | 3 | 0 | LCL | 6 | 5 | 5 | 8 |
| Salzman2013 | Sknshra | 3 | 3 | 10 | 16 | H1hesc | 4 | 2 | 18 | 7 | Ag04450 | 6 | 3 | 12 | 8 | Nhek | 3 | 2 | 25 | 8 | A549 | 3 | 3 | 17 | 5 | Helas3 | 5 | 4 | 7 | 0 | Hsmm | 5 | 2 | 0 | 1 | Bj | 1 | 1 | 7 | 9 | Gm12878 | 12 | 9 | 19 | 13 | K562 | 29 | 21 | 56 | 42 |
| Memczak2013 | neutr | 2 | 2 | 0 | 0 | |
| Jeck2013 | Hs68_RNase | 63 | 33 | 2 | 0 | Hs68_control | 7 | 6 | 44 | 37 |
| Rybak2015 | temporal_lobe | 470 | 137 | 16 | 12 | Sy5y_exp1_D2 | 5 | 4 | 14 | 16 | diencephalon | 362 | 169 | 18 | 22 | occipital_lobe | 894 | 238 | 29 | 31 | parietal_lobe | 324 | 146 | 38 | 23 | frontal_cortex | 1350 | 240 | 29 | 21 | Sy5y_exp1_D4 | 4 | 4 | 5 | 4 | SY5Y_exp2_D8 | 2 | 2 | 5 | 9 | Sy5y_exp1_D0 | 8 | 7 | 9 | 13 | cerebellum | 289 | 161 | 25 | 28 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||