| ID | hsa_circ_0000130 | |||||
| Alias | hsa_circ_000019 | |||||
| Position | chr1:151611363-151611595 | |||||
| Strand | + | |||||
| Genomic length | 232 | |||||
| Spliced sequence length | 232 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_030918 | |||||
| Gene symbol | SNX27 | |||||
| Experimental exidence | ||||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Salzman2013 | Gm12878 | 31 | 13 | 21 | 21 | K562 | 120 | 76 | 36 | 85 | Sknshra | A549 | 20 | 7 | 20 | 48 | Nhek | 13 | 5 | 17 | 32 | Bj | 4 | 1 | 6 | 14 | Ag04450 | 16 | 6 | 25 | 58 | Helas3 | 15 | 5 | 37 | 28 | H1hesc | 30 | 15 | 52 | 52 |
| Maass2017 | MSC_047 | 2 | 2 | 0 | 0 | |
| Jeck2013 | Hs68_control | 6 | 4 | 17 | 42 | Hs68_RNase | 63 | 37 | 5 | 15 |
| Rybak2015 | diencephalon | 10 | 8 | 126 | 106 | cerebellum | 10 | 8 | 74 | 120 | parietal_lobe | 9 | 9 | 95 | 97 | Sy5y_exp1_D2 | 2 | 2 | 7 | 17 | frontal_cortex | 24 | 13 | 99 | 132 | occipital_lobe | 2 | 2 | 78 | 115 | temporal_lobe | 16 | 9 | 83 | 79 |
| Memczak2013 | HEK293 | 1 | 1 | 0 | 4 | cd_19 | 3 | 2 | 4 | 6 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||