| ID | hsa_circ_0000119 | |||||
| Alias | hsa_circ_002057 | |||||
| Position | chr1:117944807-117984947 | |||||
| Strand | + | |||||
| Genomic length | 40140 | |||||
| Spliced sequence length | 648 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_006699 | |||||
| Gene symbol | MAN1A2 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Rybak2015 | Sy5y_exp1_D0 | 34 | 22 | 13 | 11 | Sy5y_exp1_D2 | 39 | 28 | 21 | 16 | temporal_lobe | 476 | 111 | 74 | 88 | frontal_cortex | 763 | 169 | 103 | 160 | SY5Y_exp2_D8 | 14 | 12 | 11 | 11 | Sy5y_exp1_D4 | 21 | 16 | 17 | 10 | SY5Y_exp2_D0 | 13 | 11 | 20 | 17 | occipital_lobe | 553 | 178 | 97 | 168 | diencephalon | 276 | 136 | 98 | 152 | cerebellum | 202 | 130 | 85 | 122 | parietal_lobe | 233 | 120 | 83 | 98 | SY5Y_exp2_D4 | 15 | 13 | 16 | 13 |
| Memczak2013 | cd_19 | 19 | 11 | 3 | 8 | HEK293 | 1 | 1 | 2 | 2 |
| Salzman2013 | Gm12878 | 17 | 13 | 11 | 50 | A549 | 5 | 4 | 1 | 24 | Sknshra | 1 | 1 | 5 | 45 | Helas3 | 7 | 4 | 4 | 16 | Ag04450 | 5 | 4 | 10 | 64 | K562 | 42 | 29 | 29 | 166 | Bj | 2 | 1 | 2 | 27 | Huvec | 4 | 1 | 3 | 20 | Nhek | Hepg2 |
| Maass2017 | vena_cava | 5 | 5 | 3 | 2 | LCL | 4 | 4 | 3 | 0 | cortex | 8 | 8 | 5 | 5 | osteocytes | 2 | 2 | 2 | 7 | ada_scid | 7 | 6 | 0 | 0 | umbilical_cord | 3 | 3 | 2 | 0 | platelets | 20 | 13 | 3 | 3 | decidua | 2 | 2 | 9 | 5 | chondrocytes | 4 | 4 | 0 | 0 | WAS2 | 11 | 8 | 5 | 5 | neutophils | 3 | 3 | 0 | 0 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||