| ID | hsa_circ_0000116 | |||||
| Alias | hsa_circ_002089 | |||||
| Position | chr1:117944807-117948267 | |||||
| Strand | + | |||||
| Genomic length | 3460 | |||||
| Spliced sequence length | 353 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_006699 | |||||
| Gene symbol | MAN1A2 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Salzman2013 | K562 | |||||
| Maass2017 | vena_cava | 2 | 2 | 3 | 12 | ada_scid | 2 | 2 | 0 | 20 | muscle | 2 | 2 | 4 | 5 | platelets | 17 | 12 | 3 | 39 | umbilical_cord | 2 | 2 | 2 | 5 | HUAEC | 2 | 2 | 8 | 6 |
| Memczak2013 | cd_19 | 23 | 11 | 3 | 169 | |
| Rybak2015 | occipital_lobe | 18 | 12 | 97 | 489 | cerebellum | 23 | 18 | 85 | 330 | Sy5y_exp1_D2 | 7 | 6 | 21 | 66 | Sy5y_exp1_D4 | 5 | 5 | 17 | 53 | parietal_lobe | 16 | 14 | 83 | 283 | temporal_lobe | 25 | 16 | 74 | 245 | frontal_cortex | 39 | 22 | 103 | 528 | diencephalon | 15 | 15 | 98 | 380 | Sy5y_exp1_D0 | 10 | 9 | 13 | 49 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||