| ID | hsa_circ_0000063 | |||||
| Alias | hsa_circ_000841 | |||||
| Position | chr1:41578954-41608784 | |||||
| Strand | - | |||||
| Genomic length | 29830 | |||||
| Spliced sequence length | 568 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_001172219 | |||||
| Gene symbol | SCMH1 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Salzman2013 | Gm12878 | 18 | 7 | 34 | 23 | A549 | 11 | 7 | 23 | 46 | Bj | 46 | 18 | 18 | 40 | Helas3 | 10 | 3 | 16 | 55 | Ag04450 | 23 | 13 | 28 | 60 | Huvec | 3 | 2 | 11 | 35 | Nhek | 2 | 1 | 18 | 17 | Hepg2 | 16 | 5 | 14 | 47 | Mcf7 | 1 | 1 | 0 | 9 | K562 | 7 | 5 | 50 | 29 | H1hesc | Sknshra | 29 | 9 | 33 | 43 |
| Memczak2013 | HEK293 | 1 | 1 | 6 | 8 | cd_19 | 2 | 1 | 7 | 4 |
| Jeck2013 | Hs68_control | 5 | 5 | 49 | 50 | Hs68_RNase | 157 | 87 | 71 | 44 |
| Rybak2015 | temporal_lobe | 52 | 28 | 49 | 29 | occipital_lobe | 64 | 44 | 59 | 29 | frontal_cortex | 126 | 68 | 70 | 37 | cerebellum | 28 | 24 | 68 | 35 | parietal_lobe | 41 | 36 | 65 | 47 | diencephalon | 85 | 73 | 71 | 54 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||