| ID | hsa_circ_0000043 | |||||
| Alias | hsa_circ_001967 | |||||
| Position | chr1:31465236-31468067 | |||||
| Strand | - | |||||
| Genomic length | 2831 | |||||
| Spliced sequence length | 438 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_014676 | |||||
| Gene symbol | PUM1 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Memczak2013 | cd_19 | 21 | 8 | 18 | 4 | |
| Salzman2013 | Gm12878 | 11 | 9 | 72 | 122 | Nhek | 23 | 10 | 57 | 220 | Ag04450 | 24 | 14 | 90 | 116 | Sknshra | 10 | 6 | 71 | 133 | Bj | 19 | 9 | 33 | 117 | Mcf7 | Hepg2 | 16 | 7 | 57 | 258 | H1hesc | 29 | 15 | 88 | 264 | Helas3 | 25 | 15 | 45 | 258 | K562 | 75 | 50 | 322 | 161 | A549 | 13 | 6 | 38 | 110 | Huvec | 9 | 5 | 44 | 108 |
| Maass2017 | WAS2 | 4 | 4 | 20 | 3 | |
| Jeck2013 | Hs68_RNase | 380 | 136 | 76 | 14 | Hs68_control | 19 | 15 | 54 | 15 |
| Rybak2015 | cerebellum | 18 | 15 | 143 | 145 | frontal_cortex | 138 | 66 | 161 | 111 | temporal_lobe | 84 | 38 | 149 | 79 | parietal_lobe | 48 | 37 | 154 | 131 | Sy5y_exp1_D2 | 4 | 3 | 45 | 20 | occipital_lobe | 64 | 43 | 138 | 125 | diencephalon | 28 | 23 | 174 | 137 | Sy5y_exp1_D0 | 4 | 4 | 48 | 18 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||